PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LSD
Protein Properties Length: 143aa    MW: 14815.3 Da    PI: 7.5014
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941225.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.97.9e-142751125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP+GA+sV+Ca+C++V
  XP_010941225.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51
                    ************************9 PP

2zf-LSD146.65.7e-156690125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+t+
  XP_010941225.1 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
                    ***********************97 PP

3zf-LSD140.15.9e-13104128125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C+ lL+Y +GA sV+Ca+C++V
  XP_010941225.1 104 CGNCQMLLMYQYGAGSVKCAVCNFV 128
                     ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-122454IPR005735Zinc finger, LSD1-type
PfamPF069435.1E-112751IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.77E-527125IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.0E-146392IPR005735Zinc finger, LSD1-type
PfamPF069439.5E-136690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.1E-10101131IPR005735Zinc finger, LSD1-type
PfamPF069436.9E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPLAPYPT APVPFTPPNG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTAVPPPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCQML LMYQYGAGSV  120
KCAVCNFVTS VGASPITEHK PNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941225.11e-98PREDICTED: protein LSD1
RefseqXP_010941226.11e-98PREDICTED: protein LSD1
SwissprotQ0J7V92e-80LSD1_ORYSJ; Protein LSD1
TrEMBLW1PNK25e-89W1PNK2_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g00990.t011e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-62lsd one like 1